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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Cheng, N."

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Byrnievirus HK97 (6)
	Homo sapiens (6)
	Human poliovirus 1 Mahoney (4)
	Oshimavirus P2345 (3)
	Cystovirus phi6 (2)
	Hepatitis B virus (2)
	Mus musculus (2)
	Arabidopsis thaliana (1)
	Human papillomavirus 16 (1)
	Poliovirus 1 (1)

More...

Taxonomy

	Duplodnaviria (9)
	Eukaryota (9)
	Riboviria (9)
	Monodnaviria (1)
	unclassified sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (14)
	X-RAY DIFFRACTION (10)

Polymer Entity Type

	Protein (24)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)
	3.5 - 4.0 (5)
	4.0 - 4.5 (4)
	> 4.5 (9)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (6)
	2010 - 2014 (6)
	2015 - 2019 (9)
	2020 - 2024 (2)

Enzyme Classification Name

Transferases (1)

Symmetry Type

	Icosahedral (18)
	Cyclic (4)
	Asymmetric (3)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	Low resolution protein structures (1)
	Alpha and beta proteins (a/b) (2)
	All beta proteins (1)
	Artifacts (1)

AllSelected

1 to 24 of 24 Structures

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1IF0 \| pdb_00001if0	Download File View File

PSEUDO-ATOMIC MODEL OF BACTERIOPHAGE HK97 PROCAPSID (PROHEAD II)

Conway, J.F., Wikoff, W.R., Cheng, N., Duda, R.L., Hendrix, R.W., Johnson, J.E., Steven, A.C.

(2001) Science 292: 744-748

Released	2001-05-02
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Byrnievirus HK97
Macromolecule	PROTEIN (MAJOR CAPSID PROTEIN GP5) (protein)

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1XYR \| pdb_00001xyr	Download File View File

Poliovirus 135S cell entry intermediate

Bubeck, D., Filman, D.J., Cheng, N., Steven, A.C., Hogle, J.M., Belnap, D.M.

(2005) J Virol 79: 7745-7755

Released	2005-08-02
Method	ELECTRON MICROSCOPY 11 Å
Organisms	Poliovirus 1
Macromolecule	Unique protein chains: 7

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2FRP \| pdb_00002frp	Download File View File

Bacteriophage HK97 Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 7.5 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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2FS3 \| pdb_00002fs3	Download File View File

Bacteriophage HK97 K169Y Head I

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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2FSY \| pdb_00002fsy	Download File View File

Bacteriophage HK97 Pepsin-treated Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

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2FT1 \| pdb_00002ft1	Download File View File

Bacteriophage HK97 Head II

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

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2FTE \| pdb_00002fte	Download File View File

Bacteriophage HK97 Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

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3IPZ \| pdb_00003ipz	Download File View File

Crystal structure of Arabidopsis monothiol glutaredoxin AtGRXcp

Li, L., Cheng, N., Wang, X.

(2010) Acta Crystallogr D Biol Crystallogr 66: 725-732

Released	2010-06-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Arabidopsis thaliana
Macromolecule	Monothiol glutaredoxin-S14, chloroplastic (protein)

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3J3O \| pdb_00003j3o	Download File View File

Conformational Shift of a Major Poliovirus Antigen Confirmed by Immuno-Cryogenic Electron Microscopy: 160S Poliovirus and C3-Fab Complex

Lin, J., Cheng, N., Hogle, J.M., Steven, A.C., Belnap, D.M.

(2013) J Immunol 191: 884-891

Released	2013-07-03
Method	ELECTRON MICROSCOPY 11.1 Å
Organisms	Human poliovirus 1 Mahoney Mus musculus unidentified
Macromolecule	Unique protein chains: 7
Unique Ligands	MYR, SPH

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3J3P \| pdb_00003j3p	Download File View File

Conformational Shift of a Major Poliovirus Antigen Confirmed by Immuno-Cryogenic Electron Microscopy: 135S Poliovirus and C3-Fab Complex

Lin, J., Cheng, N., Hogle, J.M., Steven, A.C., Belnap, D.M.

(2013) J Immunol 191: 884-891

Released	2013-07-03
Method	ELECTRON MICROSCOPY 9.1 Å
Organisms	Human poliovirus 1 Mahoney Mus musculus
Macromolecule	C3 antibody, heavy chain (protein) C3 antibody, light chain (protein) Protein VP1 (protein) Protein VP2 (protein) Protein VP3 (protein)

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3J6R \| pdb_00003j6r	Download File View File

Electron cryo-microscopy of Human Papillomavirus Type 16 capsid

Cardone, G., Moyer, A.L., Cheng, N., Thompson, C.D., Dvoretzky, I., Lowy, D.R., Schiller, J.T., Steven, A.C., Buck, C.B., Trus, B.L.

(2014) mBio 5: e01104-e01114

Released	2014-07-23
Method	ELECTRON MICROSCOPY 9.1 Å
Organisms	Human papillomavirus 16
Macromolecule	Major capsid protein L1 (protein)

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3J8F \| pdb_00003j8f	Download File View File

Cryo-EM reconstruction of poliovirus-receptor complex

Strauss, M., Filman, D.J., Belnap, D.M., Cheng, N., Noel, R.T., Hogle, J.M.

(2015) J Virol 89: 4143-4157

Released	2015-02-11
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Human poliovirus 1 Mahoney
Macromolecule	Capsid protein VP1 (protein) Capsid protein VP2 (protein) Capsid protein VP3 (protein) Capsid protein VP4 (protein) Poliovirus receptor (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, NAG

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3J9F \| pdb_00003j9f	Download File View File

Poliovirus complexed with soluble, deglycosylated poliovirus receptor (Pvr) at 4 degrees C

Strauss, M., Filman, D.J., Belnap, D.M., Cheng, N., Noel, R.T., Hogle, J.M.

(2015) J Virol 89: 4143-4157

Released	2015-02-11
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Homo sapiens Human poliovirus 1 Mahoney
Macromolecule	Unique protein chains: 7
Unique Ligands	NAG, PLM
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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4BTG \| pdb_00004btg	Download File View File

Coordinates of the bacteriophage phi6 capsid subunits (P1A and P1B) fitted into the cryoEM reconstruction of the procapsid at 4.4 A resolution

Nemecek, D., Boura, E., Wu, W., Cheng, N., Plevka, P., Qiao, J., Mindich, L., Heymann, J.B., Hurley, J.H., Steven, A.C.

(2013) Structure 21: 1374

Released	2013-08-14
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Cystovirus phi6
Macromolecule	MAJOR INNER PROTEIN P1 (protein)

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4BTQ \| pdb_00004btq	Download File View File

Coordinates of the bacteriophage phi6 capsid subunits fitted into the cryoEM map EMD-1206

Nemecek, D., Boura, E., Wu, W., Cheng, N., Plevka, P., Qiao, J., Mindich, L., Heymann, J.B., Hurley, J.H., Steven, A.C.

(2013) Structure 21: 1374

Released	2013-12-11
Method	ELECTRON MICROSCOPY 7.5 Å
Organisms	Cystovirus phi6
Macromolecule	MAJOR INNER PROTEIN P1 (protein)

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6A8R \| pdb_00006a8r	Download File View File

Crystal structure of DUX4 HD2 domain associated with ERG DNA binding site

Dong, X., Zhang, H., Cheng, N., Meng, G.

(2019) Leukemia 33: 550-553

Released	2018-10-24
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Double homeobox protein 4 (protein) DNA (5'-D(PAPAPTPCPTPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(PTPGPAPTPGPAPGPAPTPT)-3') (nucleic acid)

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6I9E \| pdb_00006i9e	Download File View File

Thermophage P23-45 empty expanded capsid

Bayfield, O.W., Klimuk, E., Winkler, D.C., Hesketh, E.L., Chechik, M., Cheng, N., Dykeman, E.C., Minakhin, L., Ranson, N.A., Severinov, K., Steven, A.C., Antson, A.A.

(2019) Proc Natl Acad Sci U S A 116: 3556-3561

Released	2019-02-06
Method	ELECTRON MICROSCOPY 3.74 Å
Organisms	Oshimavirus P2345
Macromolecule	Auxiliary protein (protein) Major head protein (protein)

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6IBC \| pdb_00006ibc	Download File View File

Thermophage P23-45 procapsid

Bayfield, O.W., Klimuk, E., Winkler, D.C., Hesketh, E.L., Chechik, M., Cheng, N., Dykeman, E.C., Minakhin, L., Ranson, N.A., Severinov, K., Steven, A.C., Antson, A.A.

(2019) Proc Natl Acad Sci U S A 116: 3556-3561

Released	2019-02-13
Method	ELECTRON MICROSCOPY 4.39 Å
Organisms	Oshimavirus P2345
Macromolecule	Major head protein (protein)

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6IBG \| pdb_00006ibg	Download File View File

Bacteriophage G20c portal protein crystal structure for construct with intact N-terminus

Bayfield, O.W., Klimuk, E., Winkler, D.C., Hesketh, E.L., Chechik, M., Cheng, N., Dykeman, E.C., Minakhin, L., Ranson, N.A., Severinov, K., Steven, A.C., Antson, A.A.

(2019) Proc Natl Acad Sci U S A 116: 3556-3561

Released	2019-01-23
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Oshimavirus P2345
Macromolecule	Portal protein (protein)
Unique Ligands	MPD

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6IMQ \| pdb_00006imq	Download File View File

Crystal structure of PML B1-box multimers

Li, Y., Ma, X., Chen, Z., Wu, H., Wang, P., Wu, W., Cheng, N., Zeng, L., Zhang, H., Cai, X., Chen, S.J., Chen, Z., Meng, G.

(2019) Nat Commun 10: 3789-3789

Released	2019-07-31
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Homo sapiens
Macromolecule	Protein PML (protein)
Unique Ligands	CL, ZN

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6UI6 \| pdb_00006ui6	Download File View File

HBV T=3 149C3A

Wu, W., Watts, N.R., Cheng, N., Huang, R., Steven, A., Wingfield, P.T.

(2020) PLoS Comput Biol 16: e1007782-e1007782

Released	2019-11-06
Method	ELECTRON MICROSCOPY 3.53 Å
Organisms	Hepatitis B virus
Macromolecule	Core protein (protein)

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6UI7 \| pdb_00006ui7	Download File View File

HBV T=4 149C3A

Wu, W., Watts, N.R., Cheng, N., Huang, R., Steven, A., Wingfield, P.T.

(2020) PLoS Comput Biol 16: e1007782-e1007782

Released	2019-11-06
Method	ELECTRON MICROSCOPY 3.65 Å
Organisms	Hepatitis B virus
Macromolecule	Core protein (protein)

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7DW5 \| pdb_00007dw5	Download File View File

Crystal structure of DUX4 HD1-HD2 domain complexed with ERG sites

Zhang, H., Cheng, N., Li, Z., Zhang, W., Dong, X., Huang, J., Meng, G.

(2021) Cancer Commun (Lond) 41: 1116-1136

Released	2021-11-03
Method	X-RAY DIFFRACTION 2.83 Å
Organisms	Homo sapiens
Macromolecule	Double homeobox protein 4-like protein 2 (protein) DNA (5'-D(PCPGPAPCPTPTPGPAPTPGPAPGPAPTPTPAPGPAPCPTP*G)-3') (nucleic acid)
Unique Ligands	BR

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7EB6 \| pdb_00007eb6	Download File View File

Crystal structure of GTP-binding protein-like domain of AGAP1

Cheng, N., Zhang, H., Zhang, S., Ma, X., Meng, G.

(2021) Acta Crystallogr F Struct Biol Commun 77: 105-112

Released	2021-04-21
Method	X-RAY DIFFRACTION 3.014 Å
Organisms	Homo sapiens
Macromolecule	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 (protein)

1 to 24 of 24 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1IF0 | pdb_00001if0

1XYR | pdb_00001xyr

2FRP | pdb_00002frp

2FS3 | pdb_00002fs3

2FSY | pdb_00002fsy

2FT1 | pdb_00002ft1

2FTE | pdb_00002fte

3IPZ | pdb_00003ipz

3J3O | pdb_00003j3o

3J3P | pdb_00003j3p

3J6R | pdb_00003j6r

3J8F | pdb_00003j8f

3J9F | pdb_00003j9f

4BTG | pdb_00004btg

4BTQ | pdb_00004btq

6A8R | pdb_00006a8r

6I9E | pdb_00006i9e

6IBC | pdb_00006ibc

6IBG | pdb_00006ibg

6IMQ | pdb_00006imq

6UI6 | pdb_00006ui6

6UI7 | pdb_00006ui7

7DW5 | pdb_00007dw5

7EB6 | pdb_00007eb6