2WSH
Structure of bacteriophage T4 EndoII E118A mutant
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | MICROBATCH | 7 | 293 | CRYSTALS WERE GROWN AT 20 DEGREES, USING THE METHOD MICRO-BATCH UNDER OIL. 2.5 UL PROTEIN SOLUTION (3 MG/ML) WAS MIXED USING VORTEX WITH 1.75 OR 2 UL OF CRYSTALLIZATION SOLUTION CONTAINING 30% PEG 3350, 100 MM BIS-TRIS BUFFER PH 7 AND 1% (W/V) N-OCTYL-B-D- GLUCOSIDE AND IMMEDIATELY PLACED UNDER PARAFFIN OIL. THE DROPS WERE IMMEDIATELY STREAK SEEDED AND CRYSTALS GREW IN A FEW HOURS. |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.6 | 52.9 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 57.417 | α = 90 |
b = 104.974 | β = 113.56 |
c = 57.865 | γ = 90 |
Symmetry | |
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Space Group | P 1 21 1 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | CCD | ADSC CCD | 2008-09-25 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | ESRF BEAMLINE ID14-1 | ESRF | ID14-1 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 1.9 | 53.07 | 98.5 | 0.1 | 9.6 | 3.6 | 49469 | 25.89 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1 | 1.9 | 2 | 90.9 | 0.62 | 1.6 | 2.9 |
Refinement
Statistics | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Diffraction ID | Structure Solution Method | Resolution (High) | Resolution (Low) | Cut-off Sigma (F) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free (DCC) | Mean Isotropic B | ||||||
X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | 1.9 | 53.042 | 1.18 | 49469 | 4572 | 92.51 | 0.202 | 0.1997 | 0.1923 | 0.2471 | 0.2383 | 31.98 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[3][3] | |||
-2.5176 | -3.4359 | 0.6631 | 1.8545 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
f_dihedral_angle_d | 16.047 |
f_angle_d | 0.774 |
f_chiral_restr | 0.056 |
f_bond_d | 0.003 |
f_plane_restr | 0.002 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 4295 |
Nucleic Acid Atoms | |
Solvent Atoms | 373 |
Heterogen Atoms | 19 |
Software
Software | |
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Software Name | Purpose |
PHENIX | refinement |
MOSFLM | data reduction |
SCALA | data scaling |
PHASER | phasing |