8SIC | pdb_00008sic

Crystal structure of Epstein-Barr virus glycoprotein 350 (gp350) in complex with Cy137C02, a monoclonal antibody isolated from macaques immunized with a gp350 nanoparticle vaccine

External Resource: Annotation

SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
A, E [auth H]	Heavy Chain	IGHV4	-	envelope glycoprotein gp350	SAbDab (2025-03-21)
B, F [auth L]	Light Chain	IGLV1	Lambda	envelope glycoprotein gp350	SAbDab (2025-03-21)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth E], D [auth G]	PF20676	Herpesvirus envelope glycoprotein gp350, N-terminal B domain (Herpes_gp350_B)	Herpesvirus envelope glycoprotein gp350, N-terminal B domain	This entry consists of the envelope glycoprotein gp350 from Epstein-Barr virus (also known as BLLF1 viral late glycoprotein). It is the most abundantly expressed glycoprotein in the viral envelope of Herpesviruses and is the major antigen responsible ...	This entry consists of the envelope glycoprotein gp350 from Epstein-Barr virus (also known as BLLF1 viral late glycoprotein). It is the most abundantly expressed glycoprotein in the viral envelope of Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo [1]. It is a 907 residues long gp350 polypeptide containing an 18-residue peptide at the C-terminal that is located inside the viral membrane, a membrane-spanning domain and a large N-terminal segment (860 residues) predicted to extend outside the viral membrane. The extreme N-terminal region (1-470) is sufficient to bind receptor CR2 (also known as CD21) and fold into three distinct domains (denoted as A, B and C) which organise into an "L-shape" structure. This is domain B [2].	Domain
C [auth E], D [auth G]	PF20677	Herpesvirus envelope glycoprotein gp350 N-terminal C domain (Herpes_gp350_C)	Herpesvirus envelope glycoprotein gp350 N-terminal C domain	This entry consists of the envelope glycoprotein gp350 from Epstein-Barr virus (also known as BLLF1 viral late glycoprotein). It is the most abundantly expressed glycoprotein in the viral envelope of Herpesviruses and is the major antigen responsible ...	This entry consists of the envelope glycoprotein gp350 from Epstein-Barr virus (also known as BLLF1 viral late glycoprotein). It is the most abundantly expressed glycoprotein in the viral envelope of Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo [1]. It is a 907 residues long gp350 polypeptide containing an 18-residue peptide at the C-terminal that is located inside the viral membrane, a membrane-spanning domain and a large N-terminal segment (860 residues) predicted to extend outside the viral membrane. The extreme N-terminal region (1-470) is sufficient to bind receptor CR2 (also known as CD21) and fold into three distinct domains (denoted as A, B and C) which organise into an "L-shape" structure. This is domain C [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, E [auth H]	Cy137C02 Fab heavy chain	-	-	-
B, F [auth L]	Cy137C02 Fab light chain	-	-	-
C [auth E], D [auth G]	Envelope glycoprotein gp350	molecular transducer activity protein binding binding molecular function activator activity signaling receptor binding signaling receptor activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	host cellular component cellular anatomical structure host cell part host cell membrane membrane virion component virion membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth E], D [auth G]	IPR048700	Envelope glycoprotein GP350, N-terminal, A domain, herpervirus superfamily	Homologous Superfamily
C [auth E], D [auth G]	IPR007796	Envelope glycoprotein GP350, N-terminal, A domain, herpervirus	Domain
C [auth E], D [auth G]	IPR048689	Envelope glycoprotein GP350, N-terminal, B domain, herpervirus	Domain
C [auth E], D [auth G]	IPR048692	Envelope glycoprotein GP350, N-terminal, C domain, herpesvirus	Domain
C [auth E], D [auth G]	IPR048698	Envelope glycoprotein GP350, N-terminal, C domain, herpesvirus superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.