Cryo-EM structure of EBV gH/gL-gp42 in complex with fab 2C1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth B] | SCOP2B Superfamily | Interleukin 8-like chemokines | 8105475 | 3001955 | SCOP2B (2022-06-29) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth H] | Heavy Chain | IGHV1 | - | soluble gp42 | envelope glycoprotein h | envelope glycoprotein l | SAbDab (2025-03-21) |
C [auth L] | Light Chain | IGKV1 | Kappa | soluble gp42 | envelope glycoprotein h | envelope glycoprotein l | SAbDab (2025-03-21) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
D [auth A] | PF17488 | Herpesvirus glycoprotein H C-terminal domain (Herpes_glycoH_C) | Herpesvirus glycoprotein H C-terminal domain | Herpesvirus glycoprotein H (gH) is a virion associated envelope glycoprotein [2]. Complex formation between gH and gL has been demonstrated in both virions and infected cells [1]. This entry represents the C-terminal domain. | Domain |
E [auth B] | PF11108 | Viral glycoprotein L (Phage_glycop_gL) | Viral glycoprotein L | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C] | IPR016186 | C-type lectin-like/link domain superfamily | Homologous Superfamily |
A [auth C] | IPR016187 | C-type lectin fold | Homologous Superfamily |
D [auth A] | IPR038172 | Herpesvirus glycoprotein H, C-terminal domain superfamily | Homologous Superfamily |
D [auth A] | IPR003493 | Herpesvirus glycoprotein H | Family |
D [auth A] | IPR035305 | Herpesvirus glycoprotein H, C-terminal | Domain |
E [auth B] | IPR034708 | Envelope glycoprotein L | Family |
E [auth B] | IPR038313 | Herpesvirus glycoprotein L, rhadinovirus-type superfamily | Homologous Superfamily |
E [auth B] | IPR020175 | Herpesvirus glycoprotein L, rhadinovirus-type | Family |