6U62 | pdb_00006u62

Raptor-Rag-Ragulator complex


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ed6u62e_ Alpha and beta proteins (a+b) Profilin-like Roadblock/LC7 domain Roadblock/LC7 domain automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd6u62f_ Alpha and beta proteins (a+b) Profilin-like Roadblock/LC7 domain Roadblock/LC7 domain automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyRas-like P-loop GTPases 8093372 3002022 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRoadblock/LC7 domain-like 8093374 3001810 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRas-like P-loop GTPases 8093371 3002022 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRoadblock/LC7 domain-like 8088845 3001810 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRoadblock/LC7 domain-like 8092495 3001810 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRoadblock/LC7 domain-like 8040242 3001810 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AKOG1517e6u62A1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: KOG1517ECOD (1.6)
ARaptor_N,KOG1517,Arme6u62A3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Raptor_N,KOG1517,ArmECOD (1.6)
ARaptor_Ne6u62A2 A: a/b three-layered sandwichesX: Caspase-like (From Topology)H: Caspase-like (From Topology)T: Caspase-likeF: Raptor_NECOD (1.6)
BGtr1_RagA_C_1e6u62B2 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Gtr1_RagA_C_1ECOD (1.6)
BGtr1_RagA_Ne6u62B1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Gtr1_RagA_NECOD (1.6)
CGtr1_RagA_Ce6u62C1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Gtr1_RagA_CECOD (1.6)
CGtr1_RagA_Ne6u62C2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Gtr1_RagA_NECOD (1.6)
ERobl_LC7e6u62E1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Robl_LC7ECOD (1.6)
GRobl_LC7e6u62G1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Robl_LC7ECOD (1.6)
HLAMTOR5e6u62H1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: LAMTOR5ECOD (1.6)
FMAPKK1_Inte6u62F1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: MAPKK1_IntECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF14538Raptor N-terminal CASPase like domain (Raptor_N)Raptor N-terminal CASPase like domainThis domain is found at the N-terminus of the Raptor protein. It has been identified to have a CASPase like structure [1]. It conserves the characteristic cys/his dyad of the caspases suggesting it may have a peptidase activity. Domain
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF02985HEAT repeat (HEAT)HEAT repeat- Repeat
PF04670Gtr1/RagA G protein conserved region (Gtr1_RagA)Gtr1/RagA G protein conserved regionGTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is ...Domain
PF04670Gtr1/RagA G protein conserved region (Gtr1_RagA)Gtr1/RagA G protein conserved regionGTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is ...Domain
PF03259Roadblock/LC7 domain (Robl_LC7)Roadblock/LC7 domainThis family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...Domain
PF16672Ragulator complex protein LAMTOR5 (LAMTOR5)Ragulator complex protein LAMTOR5Domain
PF08923Mitogen-activated protein kinase kinase 1 interacting (MAPKK1_Int)Mitogen-activated protein kinase kinase 1 interactingMitogen-activated protein kinase kinase 1 interacting protein is a small subcellular adaptor protein required for MAPK signaling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a tw ...Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Regulatory-associated protein of mTOR
Ras-related GTP-binding protein A
Ras-related GTP-binding protein C
Ragulator complex protein LAMTOR1
Ragulator complex protein LAMTOR2
Ragulator complex protein LAMTOR4-
Ragulator complex protein LAMTOR5-
Ragulator complex protein LAMTOR3