6NZD | pdb_00006nzd

Cryo-EM Structure of the Lysosomal Folliculin Complex (FLCN-FNIP2-RagA-RagC-Ragulator)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyRoadblock/LC7 domain-like 8088845 3001810 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRoadblock/LC7 domain-like 8040242 3001810 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRoadblock/LC7 domain-like 8092495 3001810 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRoadblock/LC7 domain-like 8093374 3001810 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRas-like P-loop GTPases 8093371 3002022 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyFolliculin C-terminal domain-like 8055792 3002313 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRobl_LC7e6nzdB1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Robl_LC7ECOD (1.6)
CMAPKK1_Inte6nzdC1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: MAPKK1_IntECOD (1.6)
DRobl_LC7e6nzdD1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Robl_LC7ECOD (1.6)
ELAMTOR5e6nzdE1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: LAMTOR5ECOD (1.6)
FGtr1_RagA_C_1e6nzdF1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Gtr1_RagA_C_1ECOD (1.6)
FGtr1_RagA_Ne6nzdF2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Gtr1_RagA_NECOD (1.6)
GGtr1_RagA_Ce6nzdG2 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Gtr1_RagA_CECOD (1.6)
GGtr1_RagA_Ne6nzdG1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Gtr1_RagA_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.30.450.30 Alpha Beta 2-Layer Sandwich Beta-Lactamase Dynein light chain 2a, cytoplasmicCATH (utative)
C3.30.450.30 Alpha Beta 2-Layer Sandwich Beta-Lactamase Dynein light chain 2a, cytoplasmicCATH (utative)
E3.30.450.30 Alpha Beta 2-Layer Sandwich Beta-Lactamase Dynein light chain 2a, cytoplasmicCATH (utative)
F3.30.450.190 Alpha Beta 2-Layer Sandwich Beta-Lactamase CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03259Roadblock/LC7 domain (Robl_LC7)Roadblock/LC7 domainThis family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...Domain
PF08923Mitogen-activated protein kinase kinase 1 interacting (MAPKK1_Int)Mitogen-activated protein kinase kinase 1 interactingMitogen-activated protein kinase kinase 1 interacting protein is a small subcellular adaptor protein required for MAPK signaling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a tw ...Domain
PF16672Ragulator complex protein LAMTOR5 (LAMTOR5)Ragulator complex protein LAMTOR5Domain
PF04670Gtr1/RagA G protein conserved region (Gtr1_RagA)Gtr1/RagA G protein conserved regionGTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is ...Domain
PF16692Folliculin C-terminal domain (Folliculin_C)Folliculin C-terminal domainThis is the C-terminal domain of folliculin. It has guanine nucleotide exchange factor (GEF) activity [1]. Domain
PF11704Vesicle coat protein involved in Golgi to plasma membrane transport (Folliculin)Vesicle coat protein involved in Golgi to plasma membrane transport- Family
PF14636Folliculin-interacting protein N-terminus (FNIP_N)Folliculin-interacting protein N-terminus- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Ragulator complex protein LAMTOR1
Ragulator complex protein LAMTOR2
Ragulator complex protein LAMTOR3
Ragulator complex protein LAMTOR4-
Hepatitis B virus x interacting protein-
Ras-related GTP-binding protein A
Ras-related GTP-binding protein C
Folliculin
Folliculin-interacting protein 2

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ6IAA8
PharosQ9Y2Q5
PharosQ9UHA4
PharosQ0VGL1
PharosO43504
PharosQ7L523
PharosQ9HB90
PharosQ8NFG4
PharosQ9P278

Membrane Protein Annotation: mpstruc mpstruc Database Homepage