6KDF

Crystal structure of the alpha beta heterodimer of human IDH3 in APO form.


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth B]d6kdfb_ Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
C [auth A]d6kdfa_ Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed6kdfe1 Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed6kdfe2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Gd6kdfg_ Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Id6kdfi_ Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd6kdfk_ Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Md6kdfm_ Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Od6kdfo_ Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
B [auth C]d6kdfc1 Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
B [auth C]d6kdfc2 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd6kdfd1 Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd6kdfd2 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd6kdff1 Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd6kdff2 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Hd6kdfh1 Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Hd6kdfh2 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Jd6kdfj1 Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Jd6kdfj2 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld6kdfl1 Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld6kdfl2 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Nd6kdfn1 Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Nd6kdfn2 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Pd6kdfp1 Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Pd6kdfp2 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth B]SCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8073659 3001375 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8073659 3001375 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8073659 3001375 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8073659 3001375 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8073659 3001375 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8073659 3001375 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8073659 3001375 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8073659 3001375 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8098166 3001375 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8098166 3001375 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8098166 3001375 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8098166 3001375 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8098166 3001375 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8098166 3001375 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8098166 3001375 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8098166 3001375 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]Iso_dhe6kdfB2 A: a/b three-layered sandwichesX: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)H: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)T: Isocitrate/Isopropylmalate dehydrogenase-likeF: Iso_dhECOD (1.6)
C [auth A]Iso_dhe6kdfA1 A: a/b three-layered sandwichesX: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)H: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)T: Isocitrate/Isopropylmalate dehydrogenase-likeF: Iso_dhECOD (1.6)
EIso_dhe6kdfE1 A: a/b three-layered sandwichesX: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)H: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)T: Isocitrate/Isopropylmalate dehydrogenase-likeF: Iso_dhECOD (1.6)
GIso_dhe6kdfG2 A: a/b three-layered sandwichesX: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)H: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)T: Isocitrate/Isopropylmalate dehydrogenase-likeF: Iso_dhECOD (1.6)
IIso_dhe6kdfI1 A: a/b three-layered sandwichesX: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)H: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)T: Isocitrate/Isopropylmalate dehydrogenase-likeF: Iso_dhECOD (1.6)
KIso_dhe6kdfK2 A: a/b three-layered sandwichesX: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)H: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)T: Isocitrate/Isopropylmalate dehydrogenase-likeF: Iso_dhECOD (1.6)
MIso_dhe6kdfM1 A: a/b three-layered sandwichesX: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)H: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)T: Isocitrate/Isopropylmalate dehydrogenase-likeF: Iso_dhECOD (1.6)
OIso_dhe6kdfO1 A: a/b three-layered sandwichesX: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)H: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)T: Isocitrate/Isopropylmalate dehydrogenase-likeF: Iso_dhECOD (1.6)
B [auth C]Iso_dhe6kdfC2 A: a/b three-layered sandwichesX: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)H: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)T: Isocitrate/Isopropylmalate dehydrogenase-likeF: Iso_dhECOD (1.6)
DIso_dhe6kdfD2 A: a/b three-layered sandwichesX: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)H: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)T: Isocitrate/Isopropylmalate dehydrogenase-likeF: Iso_dhECOD (1.6)
FIso_dhe6kdfF2 A: a/b three-layered sandwichesX: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)H: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)T: Isocitrate/Isopropylmalate dehydrogenase-likeF: Iso_dhECOD (1.6)
HIso_dhe6kdfH2 A: a/b three-layered sandwichesX: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)H: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)T: Isocitrate/Isopropylmalate dehydrogenase-likeF: Iso_dhECOD (1.6)
JIso_dhe6kdfJ2 A: a/b three-layered sandwichesX: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)H: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)T: Isocitrate/Isopropylmalate dehydrogenase-likeF: Iso_dhECOD (1.6)
LIso_dhe6kdfL1 A: a/b three-layered sandwichesX: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)H: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)T: Isocitrate/Isopropylmalate dehydrogenase-likeF: Iso_dhECOD (1.6)
NIso_dhe6kdfN1 A: a/b three-layered sandwichesX: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)H: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)T: Isocitrate/Isopropylmalate dehydrogenase-likeF: Iso_dhECOD (1.6)
PIso_dhe6kdfP1 A: a/b three-layered sandwichesX: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)H: Isocitrate/Isopropylmalate dehydrogenase-like (From Topology)T: Isocitrate/Isopropylmalate dehydrogenase-likeF: Iso_dhECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth B]3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate DehydrogenaseCATH (utative)
C [auth A]3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate DehydrogenaseCATH (utative)
E3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate DehydrogenaseCATH (utative)
G3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate DehydrogenaseCATH (utative)
I3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate DehydrogenaseCATH (utative)
K3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate DehydrogenaseCATH (utative)
M3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate DehydrogenaseCATH (utative)
O3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate DehydrogenaseCATH (utative)
B [auth C]3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate DehydrogenaseCATH (utative)
D3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate DehydrogenaseCATH (utative)
F3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate DehydrogenaseCATH (utative)
H3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate DehydrogenaseCATH (utative)
J3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate DehydrogenaseCATH (utative)
L3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate DehydrogenaseCATH (utative)
N3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate DehydrogenaseCATH (utative)
P3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate DehydrogenaseCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00180Isocitrate/isopropylmalate dehydrogenase (Iso_dh)Isocitrate/isopropylmalate dehydrogenase- Domain
PF00180Isocitrate/isopropylmalate dehydrogenase (Iso_dh)Isocitrate/isopropylmalate dehydrogenase- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial
Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial