5CAM | pdb_00005cam

Crystal Structure of the Cytoplasmic Domain of the Pseudomonas putida Anti-sigma Factor PupR (SeMet)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	PupR cytoplasmic domain	8045129	4004309	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PupR N-terminal domain-like	8056961	3002369	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	PupR N-terminal domain-like	8056961	3002369	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PupR N-terminal domain-like	8056961	3002369	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PupR N-terminal domain-like	8056961	3002369	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF4880	e5camA1	A: alpha arrays	X: N-terminal, cytoplasmic domain of anti-sigma factors (From Topology)	H: N-terminal, cytoplasmic domain of anti-sigma factors (From Topology)	T: N-terminal, cytoplasmic domain of anti-sigma factors	F: DUF4880	ECOD (1.6)
B	DUF4880	e5camB1	A: alpha arrays	X: N-terminal, cytoplasmic domain of anti-sigma factors (From Topology)	H: N-terminal, cytoplasmic domain of anti-sigma factors (From Topology)	T: N-terminal, cytoplasmic domain of anti-sigma factors	F: DUF4880	ECOD (1.6)
C	DUF4880	e5camC1	A: alpha arrays	X: N-terminal, cytoplasmic domain of anti-sigma factors (From Topology)	H: N-terminal, cytoplasmic domain of anti-sigma factors (From Topology)	T: N-terminal, cytoplasmic domain of anti-sigma factors	F: DUF4880	ECOD (1.6)
D	DUF4880	e5camD1	A: alpha arrays	X: N-terminal, cytoplasmic domain of anti-sigma factors (From Topology)	H: N-terminal, cytoplasmic domain of anti-sigma factors (From Topology)	T: N-terminal, cytoplasmic domain of anti-sigma factors	F: DUF4880	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF16220	Domain of unknown function (DUF4880) (DUF4880)	Domain of unknown function (DUF4880)	This domain can be found on the N-terminal of uncharacterized proteins from various Rhodopseudomonas and Pseudomonas species, often, but not always followed by the ron siderophore sensor protein family (FecR, PF04773). The function of this domain is ...	This domain can be found on the N-terminal of uncharacterized proteins from various Rhodopseudomonas and Pseudomonas species, often, but not always followed by the ron siderophore sensor protein family (FecR, PF04773). The function of this domain is unknown.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	PupR protein	sigma factor antagonist activity transcription corepressor activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR032623	FecR, N-terminal	Domain
A, B, C, D	IPR012373	Fe(2+)-dicitrate sensor, transmembrane component	Family
A, B, C, D	IPR006860	FecR protein	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.