3PNS

Crystal Structure of Uridine Phosphorylase Complexed with Uracil from Vibrio cholerae O1 biovar El Tor


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad3pnsa_ Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Purine and uridine phosphorylases Purine and uridine phosphorylases automated matches (Vibrio cholerae O1 biovar El Tor str. N16961 ) [TaxId: 243277 ], SCOPe (2.08)
Bd3pnsb_ Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Purine and uridine phosphorylases Purine and uridine phosphorylases automated matches (Vibrio cholerae O1 biovar El Tor str. N16961 ) [TaxId: 243277 ], SCOPe (2.08)
Cd3pnsc_ Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Purine and uridine phosphorylases Purine and uridine phosphorylases automated matches (Vibrio cholerae O1 biovar El Tor str. N16961 ) [TaxId: 243277 ], SCOPe (2.08)
Fd3pnsf_ Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Purine and uridine phosphorylases Purine and uridine phosphorylases automated matches (Vibrio cholerae O1 biovar El Tor str. N16961 ) [TaxId: 243277 ], SCOPe (2.08)
Gd3pnsg_ Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Purine and uridine phosphorylases Purine and uridine phosphorylases automated matches (Vibrio cholerae O1 biovar El Tor str. N16961 ) [TaxId: 243277 ], SCOPe (2.08)
Hd3pnsh_ Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Purine and uridine phosphorylases Purine and uridine phosphorylases automated matches (Vibrio cholerae O1 biovar El Tor str. N16961 ) [TaxId: 243277 ], SCOPe (2.08)
Id3pnsi_ Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Purine and uridine phosphorylases Purine and uridine phosphorylases automated matches (Vibrio cholerae O1 biovar El Tor str. N16961 ) [TaxId: 243277 ], SCOPe (2.08)
Jd3pnsj_ Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Purine and uridine phosphorylases Purine and uridine phosphorylases automated matches (Vibrio cholerae O1 biovar El Tor str. N16961 ) [TaxId: 243277 ], SCOPe (2.08)
Kd3pnsk_ Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Purine and uridine phosphorylases Purine and uridine phosphorylases automated matches (Vibrio cholerae O1 biovar El Tor str. N16961 ) [TaxId: 243277 ], SCOPe (2.08)
Ld3pnsl_ Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Purine and uridine phosphorylases Purine and uridine phosphorylases automated matches (Vibrio cholerae O1 biovar El Tor str. N16961 ) [TaxId: 243277 ], SCOPe (2.08)
Dd3pnsd_ Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Purine and uridine phosphorylases Purine and uridine phosphorylases automated matches (Vibrio cholerae O1 biovar El Tor str. N16961 ) [TaxId: 243277 ], SCOPe (2.08)
Ed3pnse_ Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Purine and uridine phosphorylases Purine and uridine phosphorylases automated matches (Vibrio cholerae O1 biovar El Tor str. N16961 ) [TaxId: 243277 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPurine and uridine phosphorylases 8074239 3000626 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPurine and uridine phosphorylases 8074239 3000626 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPurine and uridine phosphorylases 8074239 3000626 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyPurine and uridine phosphorylases 8074239 3000626 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyPurine and uridine phosphorylases 8074239 3000626 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPurine and uridine phosphorylases 8074239 3000626 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyPurine and uridine phosphorylases 8074239 3000626 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyPurine and uridine phosphorylases 8074239 3000626 SCOP2B (2022-06-29)
KSCOP2 FamilyPurine and uridine phosphorylases 8074238 4000573 SCOP2 (2022-06-29)
KSCOP2 SuperfamilyPurine and uridine phosphorylases 8074239 3000626 SCOP2 (2022-06-29)
LSCOP2B SuperfamilyPurine and uridine phosphorylases 8074239 3000626 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPurine and uridine phosphorylases 8074239 3000626 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyPurine and uridine phosphorylases 8074239 3000626 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APNP_UDP_1e3pnsA1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-like (From Topology)T: Peptidyl-tRNA hydrolase-likeF: PNP_UDP_1ECOD (1.6)
BPNP_UDP_1e3pnsB1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-like (From Topology)T: Peptidyl-tRNA hydrolase-likeF: PNP_UDP_1ECOD (1.6)
CPNP_UDP_1e3pnsC1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-like (From Topology)T: Peptidyl-tRNA hydrolase-likeF: PNP_UDP_1ECOD (1.6)
FPNP_UDP_1e3pnsF1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-like (From Topology)T: Peptidyl-tRNA hydrolase-likeF: PNP_UDP_1ECOD (1.6)
GPNP_UDP_1e3pnsG1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-like (From Topology)T: Peptidyl-tRNA hydrolase-likeF: PNP_UDP_1ECOD (1.6)
HPNP_UDP_1e3pnsH1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-like (From Topology)T: Peptidyl-tRNA hydrolase-likeF: PNP_UDP_1ECOD (1.6)
IPNP_UDP_1e3pnsI1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-like (From Topology)T: Peptidyl-tRNA hydrolase-likeF: PNP_UDP_1ECOD (1.6)
JPNP_UDP_1e3pnsJ1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-like (From Topology)T: Peptidyl-tRNA hydrolase-likeF: PNP_UDP_1ECOD (1.6)
KPNP_UDP_1e3pnsK1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-like (From Topology)T: Peptidyl-tRNA hydrolase-likeF: PNP_UDP_1ECOD (1.6)
LPNP_UDP_1e3pnsL1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-like (From Topology)T: Peptidyl-tRNA hydrolase-likeF: PNP_UDP_1ECOD (1.6)
DPNP_UDP_1e3pnsD1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-like (From Topology)T: Peptidyl-tRNA hydrolase-likeF: PNP_UDP_1ECOD (1.6)
EPNP_UDP_1e3pnsE1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-like (From Topology)T: Peptidyl-tRNA hydrolase-likeF: PNP_UDP_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF01048Phosphorylase superfamily (PNP_UDP_1)Phosphorylase superfamilyMembers of this family include: purine nucleoside phosphorylase (PNP) Uridine phosphorylase (UdRPase) 5'-methylthioadenosine phosphorylase (MTA phosphorylase)Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Uridine phosphorylase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR018016Nucleoside phosphorylase, conserved siteConserved Site
A, B, C, D, E
IPR035994Nucleoside phosphorylase superfamilyHomologous Superfamily
A, B, C, D, E
IPR010058Uridine phosphorylaseFamily
A, B, C, D, E
IPR000845Nucleoside phosphorylase domainDomain