3TR5
Structure of a peptide chain release factor 3 (prfC) from Coxiella burnetii
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D | SCOP2B Superfamily | Ras-like P-loop GTPases | 8092481 | 3002022 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | EF-Tu post-G domain-like | 8092482 | 3002024 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | EF-G C-terminal domain-like | 8092479 | 3001287 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | EF-G C-terminal domain-like | 8092480 | 3001287 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ras-like P-loop GTPases | 8092481 | 3002022 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | EF-G C-terminal domain-like | 8092479 | 3001287 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | EF-Tu post-G domain-like | 8092482 | 3002024 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | EF-G C-terminal domain-like | 8092480 | 3001287 | SCOP2B (2022-06-29) |
B | SCOP2 Family | RF3 C-terminal domain-like | 8045934 | 4004772 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Translation factor common region-like | 8092478 | 4004050 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | EF-G C-terminal domain-like | 8092479 | 3001287 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Ras-like P-loop GTPases | 8092481 | 3002022 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | EF-G C-terminal domain-like | 8092480 | 3001287 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | EF-Tu post-G domain-like | 8092482 | 3002024 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | EF-G C-terminal domain-like | 8092479 | 3001287 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | EF-G C-terminal domain-like | 8092480 | 3001287 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | EF-Tu post-G domain-like | 8092482 | 3002024 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ras-like P-loop GTPases | 8092481 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | GTP_EFTU_D2 | e3tr5D15 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2 | ECOD (1.6) |
D | UNK_F_TYPE | e3tr5D14 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: UNK_F_TYPE | ECOD (1.6) |
D | MnmE_helical_2nd | e3tr5D13 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
A | GTP_EFTU_D2 | e3tr5A9 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2 | ECOD (1.6) |
A | UNK_F_TYPE | e3tr5A8 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: UNK_F_TYPE | ECOD (1.6) |
A | MnmE_helical_2nd | e3tr5A7 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
B | GTP_EFTU_D2 | e3tr5B6 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2 | ECOD (1.6) |
B | UNK_F_TYPE | e3tr5B5 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: UNK_F_TYPE | ECOD (1.6) |
B | MnmE_helical_2nd | e3tr5B4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
C | GTP_EFTU_D2 | e3tr5C15 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2 | ECOD (1.6) |
C | UNK_F_TYPE | e3tr5C14 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: UNK_F_TYPE | ECOD (1.6) |
C | MnmE_helical_2nd | e3tr5C13 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain | |
PF22042 | Elongation factor G domain 2 (EF-G_D2) | Elongation factor G domain 2 | Elongation factor G (EF-G) catalyzes the translocation step of translation. It consists of five structural domains, this entry represents the second domain [1]. This domain adopts a beta barrel structure. This family also includes domains found in ot ... | Domain | |
PF16658 | Class II release factor RF3, C-terminal domain (RF3_C) | Class II release factor RF3, C-terminal domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005225 | Small GTP-binding domain | Domain | |
IPR032090 | Peptide chain release factor 3, C-terminal | Domain | |
IPR000795 | Translational (tr)-type GTP-binding domain | Domain | |
IPR041732 | Peptide chain release factor 3, GTP-binding domain | Domain | |
IPR031157 | Tr-type G domain, conserved site | Conserved Site | |
IPR035647 | EF-G domain III/V-like | Homologous Superfamily | |
IPR053905 | Elongation factor G-like, domain II | Domain | |
IPR004548 | Peptide chain release factor 3 | Family | |
IPR009000 | Translation protein, beta-barrel domain superfamily | Homologous Superfamily | |
IPR038467 | Peptide chain release factor 3, domain III superfamily | Homologous Superfamily | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |