Crystal Structure of Pokeweed Lectin-D2 complexed with tri-N-acetylchitotriose
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d1ulmb1 | Small proteins | Knottins (small inhibitors, toxins, lectins) | Plant lectins/antimicrobial peptides | Hevein-like agglutinin (lectin) domain | Lectin-D | (Phytolacca americana ) [TaxId: 3527 ], | SCOPe (2.08) |
A | d1ulma1 | Small proteins | Knottins (small inhibitors, toxins, lectins) | Plant lectins/antimicrobial peptides | Hevein-like agglutinin (lectin) domain | Lectin-D | (Phytolacca americana ) [TaxId: 3527 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Plant lectins/antimicrobial peptides | 8041809 | 3000195 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Plant lectins/antimicrobial peptides | 8041807 | 3000195 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Plant lectins/antimicrobial peptides | 8041809 | 3000195 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Plant lectins/antimicrobial peptides | 8041807 | 3000195 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Chitin_bind_1 | e1ulmB1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Plant lectins/antimicrobial peptides | F: Chitin_bind_1 | ECOD (1.6) |
A | Chitin_bind_1 | e1ulmA1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Plant lectins/antimicrobial peptides | F: Chitin_bind_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.30.60.10 | Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2) | domain 1 | CATH (4.3.0) |
A | 3.30.60.10 | Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2) | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00187 | Chitin recognition protein (Chitin_bind_1) | Chitin recognition protein | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001002 | Chitin-binding, type 1 | Domain | |
IPR018371 | Chitin-binding, type 1, conserved site | Conserved Site | |
IPR036861 | Endochitinase-like superfamily | Homologous Superfamily |