1TC3 | pdb_00001tc3

TRANSPOSASE TC3A1-65 FROM CAENORHABDITIS ELEGANS

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d1tc3c_	All alpha proteins	DNA/RNA-binding 3-helical bundle	Homeodomain-like	Recombinase DNA-binding domain	Transposase tc3a1-65	(Caenorhabditis elegans ) [TaxId: 6239 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Homeodomain-like	8044640	3000001	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	HTH_Tnp_Tc3_1	e1tc3C1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: HTH_Tnp_Tc3_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	1.10.10.60	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Homeodomain-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF11427	Tc3 transposase (HTH_Tnp_Tc3_1)	Tc3 transposase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	DNA (5'-D(APGPGPGPGPGPGPGPTPCPCPTPAPTPAPGPA PAPCPTP*T)-3')	-	-	-
B	DNA (5'-D(APGPTPTPCPTPAPTPAPGPGPAPCPCPCPCPC PCPCPT)-3')	-	-	-
C	PROTEIN (TC3 TRANSPOSASE)	DNA binding binding nucleic acid binding	nucleobase-containing compound metabolic process metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process DNA integration nucleic acid metabolic process DNA recombination	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
C	IPR009057	Homedomain-like superfamily	Homologous Superfamily
C	IPR025898	Tc3 transposase, DNA binding domain	Domain
C	IPR048703	Transposable element Tc3 transposase-like, DNA-binding HTH domain	Domain
C	IPR052338	Transposase_5	Family
C	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
C	IPR038717	Tc1-like transposase, DDE domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.