1KZU
INTEGRAL MEMBRANE PERIPHERAL LIGHT HARVESTING COMPLEX FROM RHODOPSEUDOMONAS ACIDOPHILA STRAIN 10050
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Light-harvesting complex subunits | 8043857 | 3000199 | SCOP2B (2022-06-29) |
E [auth G] | SCOP2B Superfamily | Light-harvesting complex subunits | 8043857 | 3000199 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Light-harvesting complex subunits | 8043857 | 3000199 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | LHC_like | e1kzuB1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: LHC_like | ECOD (1.6) |
D [auth E] | LHC_like | e1kzuE1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: LHC_like | ECOD (1.6) |
F [auth H] | LHC_like | e1kzuH1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: LHC_like | ECOD (1.6) |
A | LHC_like | e1kzuA1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: LHC_like | ECOD (1.6) |
E [auth G] | LHC_like | e1kzuG1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: LHC_like | ECOD (1.6) |
C [auth D] | LHC_like | e1kzuD1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: LHC_like | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 1.20.5.250 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
D [auth E] | 1.20.5.250 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
F [auth H] | 1.20.5.250 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
A | 4.10.220.20 | Few Secondary Structures | Irregular | Light-harvesting Protein | Light-harvesting complex | CATH (4.3.0) |
E [auth G] | 4.10.220.20 | Few Secondary Structures | Irregular | Light-harvesting Protein | Light-harvesting complex | CATH (4.3.0) |
C [auth D] | 4.10.220.20 | Few Secondary Structures | Irregular | Light-harvesting Protein | Light-harvesting complex | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B, D [auth E], F [auth H] | PF00556 | Antenna complex alpha/beta subunit (LHC) | Antenna complex alpha/beta subunit | - | Domain |
A, C [auth D], E [auth G] | PF00556 | Antenna complex alpha/beta subunit (LHC) | Antenna complex alpha/beta subunit | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B, D [auth E], F [auth H] | IPR000066 | Antenna complex, alpha/beta subunit | Domain |
B, D [auth E], F [auth H] | IPR023624 | Antenna complex, beta domain superfamily | Homologous Superfamily |
B, D [auth E], F [auth H] | IPR035889 | Light-harvesting complex | Homologous Superfamily |
B, D [auth E], F [auth H] | IPR023623 | Antenna complex, beta subunit, conserved site | Conserved Site |
B, D [auth E], F [auth H] | IPR002362 | Light-harvesting protein B beta chain | Family |
A, C [auth D], E [auth G] | IPR000066 | Antenna complex, alpha/beta subunit | Domain |
A, C [auth D], E [auth G] | IPR018332 | Antenna complex, alpha subunit | Family |
A, C [auth D], E [auth G] | IPR002361 | Antenna complex, alpha subunit conserved site | Conserved Site |
A, C [auth D], E [auth G] | IPR035889 | Light-harvesting complex | Homologous Superfamily |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
A, C [auth D], E [auth G] | FME | Parent Component: MET :  AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |